Downloads
- Network Component Analysis:
- NCA toolbox v. 2.3 for Matlab 7 (released Feb. 19, 2007)
- NCA proofs (Liao et al. PNAS 2003, 15522-15527 appendices.)
- NCA Modules and Data files (Kao et al. PNAS 2004, 641-646.)
- Software for Statistical Analysis of Microarray data: lcDNA.
- Supplemental information for papers:
- A synthetic gene-matabolic oscillator
- links to the paper: Fung et al. Nature, 435, 118-122.
- Download Supplementary material
- Brynildsen, M.P., Tran, L. M. and Liao, J.C. (2006) A Gibbs Sampler for the Identification of Gene Expression and Network Connectivity Consistency.
Bioinformatics, 22, 3040-3046.
- link to paper: Brynildsen et al. Bioinformatics, 22, 3040-3046
- Software and Supplementary Information: download software uploaded 5/8/2007
- Network visualization: Osprey - SIF uploaded 3/30/2007
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Brynildsen, M.P.; Wu, T.Y.; Jang, S.S. and Liao, J.C. (2007) Biological Network Mapping and Source Signal Deduction, Bioinformatics, 23: 1783-1791
- link to Network Component Mapping modules
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Tran, L.M, Hydguke, D.R., and Liao, J.C. Trimming of Mammalian Transcriptional Networks using Network Component Analysis, submitted to Bioinformatics, Download Matlab code here
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Ensemble Modeling: Download Matlab Code and Examples.
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"Ensemble Modeling and the Mathematical Modeling of Metabolic Networks" by Rizk & Liao. Download example here.